Search Results for: datasets

New & Improved NCBI Datasets Genome and Assembly Pages

New & Improved NCBI Datasets Genome and Assembly Pages

Legacy pages will be redirected effective June 2023 In June 2023, NCBI’s Assembly and Genome record pages will be redirected to new Datasets pages as part of our ongoing effort to modernize and improve your user experience. NCBI Datasets is a new resource that makes it easier to find and download genome data.   We will … Continue reading New & Improved NCBI Datasets Genome and Assembly Pages

Now Available! Updated NCBI Datasets Command-Line Tools 

Now Available! Updated NCBI Datasets Command-Line Tools 

NLM’s NCBI Datasets announces the release of version 14 of our command-line (CLI) tools, datasets, and dataformat. This release (CLI v14.0.0) contains many improvements that are inspired by your feedback. It’s now easier than ever to browse and format metadata, generate customized tables, and download data packages. We hope these updates will improve your experience!  … Continue reading Now Available! Updated NCBI Datasets Command-Line Tools 

Introducing NLM’s new NCBI Datasets genome page!

Introducing NLM’s new NCBI Datasets genome page!

As part of an ongoing effort to modernize and improve your experience, NLM’s NCBI Datasets is introducing all-new genome pages. These pages make it easier for you to browse and download genome sequence and metadata, and navigate to tools such as the Genome Data Viewer (GDV) and BLAST. To get started, search NCBI Datasets by … Continue reading Introducing NLM’s new NCBI Datasets genome page!

Announcing the NCBI Datasets SARS-CoV-2 taxonomy page

Announcing the NCBI Datasets SARS-CoV-2 taxonomy page

Need SARS-CoV-2 assembled genome sequences or specific SARS-CoV-2 protein sequences? You can find them on the new SARS-CoV-2 taxonomy page brought to you by NCBI Datasets. The NCBI Datasets SARS-CoV-2 taxonomy page brings you both SARS-CoV-2 genomes and proteins, basic information about SARS-CoV-2, and connections to related NCBI pages, all in one place (see Figures … Continue reading Announcing the NCBI Datasets SARS-CoV-2 taxonomy page

NLM’s all-new NCBI Datasets genome table is now available

NLM’s all-new NCBI Datasets genome table is now available

We are excited to introduce new and useful updates to the Datasets genome table that let you quickly find and download a genome dataset including genome, transcript and protein sequence, annotation, and a data report. The new genome table includes many new features and benefits (see Figure 1). With the new genome table you can: Find … Continue reading NLM’s all-new NCBI Datasets genome table is now available

Try out Datasets and ElasticBLAST at the BOSC 2022 CoFest!

Try out Datasets and ElasticBLAST at the BOSC 2022 CoFest!

Join NLM’s NCBI at the virtual CollaborationFest on July 15 from 08:00 – 11:00 CDT and 12:00 – 16:00 CDT following the BOSC 2022 conference. Get an in-depth orientation and opportunity to test the capabilities of Datasets and ElasticBLAST. What is Datasets? Datasets is a new resource that lets you easily gather data from across … Continue reading Try out Datasets and ElasticBLAST at the BOSC 2022 CoFest!

Coming soon! Changes to NCBI Datasets command-line tool in version 14 (CLIv14.0.0)

Coming soon! Changes to NCBI Datasets command-line tool in version 14 (CLIv14.0.0)

In October 2022, NCBI Datasets will release version 14 of our datasets and dataformat command-line tools. This release will contain breaking changes to the command syntax, content of the data packages and data reports. Thank you for your feedback that inspired these new features. We hope they will improve your experience! We will continue to … Continue reading Coming soon! Changes to NCBI Datasets command-line tool in version 14 (CLIv14.0.0)

Streamlining Access to SRA COVID-19 Datasets on the Cloud

Streamlining Access to SRA COVID-19 Datasets on the Cloud

To make it easier for you to find and access Sequence Read Archive (SRA) data, we are re-organizing and improving our cloud storage systems.   Beginning April 2023, we will move the SARS-CoV-2 normalized data and source files from the COVID-19 data buckets on Amazon Web Services (AWS) and Google Cloud Platform (GCP) to the NIH … Continue reading Streamlining Access to SRA COVID-19 Datasets on the Cloud

New Way to View and Download Related Genes

New Way to View and Download Related Genes

Effective June 2023, the HomoloGene records will redirect to the Datasets Gene Table Do you use HomoloGene to view and download data? You can now access updated homology data from NCBI Datasets through the Datasets Gene Table with connections to NCBI Orthologs. Go directly from a HomoloGene record to the Datasets Gene Table that will … Continue reading New Way to View and Download Related Genes