Tag: API

June 20 NCBI Minute: Getting the Genomic Context for BLAST Protein Matches

June 20 NCBI Minute: Getting the Genomic Context for BLAST Protein Matches

Do you ever want to see the flanking genes of a protein match from a BLAST search?  On June 20th, we’ll show you how to see the genomic context of bacterial proteins using the identical protein report and the graphical sequence viewer. You will also learn to use these reports in detail and how to get these genomic contexts in batch for a set of protein matches using the identical proteins report and EDirect .

Date and time: Wed, June 20, 2018 12:00 PM – 12:30 PM EDT

Click to register.

After registering, you will receive a confirmation email with information about attending the webinar. A few days after the live presentation, you can view the recording on the NCBI YouTube channel. You can learn about future webinars on the Webinars and Courses page.

June 13 NCBI Minute: Using EDirect to Query a Local Installation of PubMed

June 13 NCBI Minute: Using EDirect to Query a Local Installation of PubMed

Next Wednesday, June 13, 2018, we’ll show you how to use EDirect to install PubMed locally and then search and retrieve records from the local instance. You will also see an analysis example that shows the significant speed improvement with the Local Cache and employs some advanced EDirect xtract options to aid with processing records.

Date and time: Wed, June 13, 2018 12:00 PM – 12:30 PM EDT

Click to register.

After registering, you will receive a confirmation email with information about attending the webinar. A few days after the live presentation, you can view the recording on the NCBI YouTube channel. You can learn about future webinars on the Webinars and Courses page.

Testing Periods for New API Keys

You’ll want to pay attention to this if you regularly use the E-utilities API. As we announced last fall, we are in the process of introducing API keys for the E-utilities. This post will update the schedule of this process and outline our release plan, which will include a series of testing periods.

So what’s happening?

We’re learning a lot from you!

Thanks for all of your feedback! Ongoing conversations with our users are helping us plan this release in a way that will benefit everyone as much as possible. Please continue to reach out to us with ideas and suggestions!

The effective date for release of API keys has been pushed back.

We will not be activating API keys on May 1, 2018 as originally announced. That date is being moved to be no earlier than September 1, 2018.

Continue reading “Testing Periods for New API Keys”

April 25 NCBI Minute: Revised Release Plan for the New NCBI API Keys

April 25 NCBI Minute: Revised Release Plan for the New NCBI API Keys

As previously announced, NCBI is introducing API keys for the E-utilities. This NCBI Minute will review these keys and their benefits for API users, and will update the schedule for when we will activate these keys. We will also describe plans for a test site and a series of testing periods during which these keys will be fully active. These periods are an ideal opportunity for developers to test their products in this new environment.

Please register and join us for this webinar to be presented on Wednesday, April 25, 2018 at noon, Eastern time.

After registering, you will receive a confirmation email with information about attending the webinar. A few days after the live presentation, you can view the recording on the NCBI YouTube channel. You can learn about future webinars on the Webinars and Courses page.

February 14th NCBI Minute: How to quickly retrieve a sequence from NCBI

February 14th NCBI Minute: How to quickly retrieve a sequence from NCBI

On Wednesday, February 14, 2018, NCBI will present a webinar that will show you how to quickly retrieve sequences in any format from NCBI.

Date & time: Wed, Feb 14, 2018 12:00 PM – 12:30 PM EST

Ever need to quickly grab a protein or nucleotide sequence in FASTA or another format from NCBI? This NCBI Minute will show you how to accomplish this using the nucleotide and protein web pages, an NCBI URL, and – the most flexible way – through the commandline EDirect client that accesses the E-Utilities API.

After registering, you will receive a confirmation email with information about attending the webinar. A few days after the live presentation, you can view the recording on the NCBI YouTube channel. You can learn about future webinars on the Webinars and Courses page.

NLM Webinar: Insider’s Guide to Accessing NLM Data: Welcome to E-utilities for PubMed (Tuesday, February 13 at 1pm EST)

NLM Webinar: Insider’s Guide to Accessing NLM Data: Welcome to E-utilities for PubMed (Tuesday, February 13 at 1pm EST)

Want to do more with PubMed?

Want to extract just the PubMed data you need, in the format you want?

Dreaming of creating your own PubMed tool or interface, but don’t know where to start?

Join us on Tuesday, February 13 at 1pm EST for a one-hour introductory webinar designed to teach you more powerful and flexible ways of accessing NLM data, starting with the Application Programming Interfaces (APIs) for PubMed and other NCBI databases. This presentation is part of the Insider’s Guide, a series aimed at librarians and other information specialists who have experience using PubMed via the traditional Web interface, but now want to dig deeper. Continue reading “NLM Webinar: Insider’s Guide to Accessing NLM Data: Welcome to E-utilities for PubMed (Tuesday, February 13 at 1pm EST)”

New videos on YouTube: NCBI resources, QuickBlastP, update to API keys for E-Utils, and advanced use of API keys

Need a refresher of what NCBI offers? Or just feel you aren’t taking full advantage of NCBI resources? Check out some of NCBI’s most recent recordings of NCBI Minute webinars up on the NCBI YouTube channel.

Continue reading “New videos on YouTube: NCBI resources, QuickBlastP, update to API keys for E-Utils, and advanced use of API keys”

November 28th NCBI Minute: An update to “API Keys for Better E-Utilities and EDirect Access to NCBI Data”

November 28th NCBI Minute: An update to “API Keys for Better E-Utilities and EDirect Access to NCBI Data”

On Tuesday, November 28, 2017, NCBI will present an update to the webinar originally presented on November 8, 2017 about the new API keys. In this updated webinar, you will learn about the relationships between API keys, NCBI accounts and IP addresses and see additional details about rates of access and server messages. You will also get answers to many important questions asked in the original webinar.

Date and time: Wednesday, November 8, 2017 12:00-12:30PM EST

After registering, you will receive a confirmation email with information about attending the webinar. After the live presentation, the webinar will be uploaded to the NCBI YouTube channel. You can learn about future webinars on the Webinars and Courses page.