Tag: Genome Browser

NCBI’s Genome Data Viewer now displays data from track hubs

The Genome Data Viewer’s (GDV) browser display now supports content provided in track hubs. This new GDV feature, summarized in this short video, extends the genome browser’s capability when it comes to viewing user-supplied data tracks alongside NCBI-provided tracks.  You now have multiple options to analyze your data that include uploading your data (file/URL), streaming individual files from a remote location and/or connecting to a track hub. In all instances, GDV recognizes a variety of popular file formats with support for additional file formats planned. In the display, you can now also easily distinguish user-supplied tracks by their green-tinted track labels. Continue reading “NCBI’s Genome Data Viewer now displays data from track hubs”

Map Viewer retirement: New FTP directory paths

Map Viewer retirement: New FTP directory paths

In October of last year, we announced the replacement of NCBI’s Map viewer with the Genome Data Viewer (GDV).  Here are some additional details on how to access to the older Map Viewer FTP content going forward and some information to help you with the transition to GDV.

As we announced last fall, we are no longer updating the data content of Map Viewer FTP directories. To help avoid any confusion over the meaning of the directory names,  we will alter the CURRENT and PREVIOUS directories under the species directories in the Map Viewer FTP area so that they no longer point to data. However, the existing data will still be available on the FTP site.

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NCBI’s Genome Data Viewer (GDV) to replace Map Viewer

The Genome Data Viewer (GDV) is now the main genome browser at NCBI replacing the Map Viewer, our original genome browser. GDV is a modern genome browser with essential improvements over Map Viewer. These include sequence-level details and an automated update process that keeps up with the rapid pace of genome sequencing, assembly and annotation.

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The Genome Data Viewer homepage (top panel) and browser view (bottom panel)

Continue reading “NCBI’s Genome Data Viewer (GDV) to replace Map Viewer”