We are pleased to announce the first ever pangenomics, graphs and haplotypes hackathon.
From March 25-27, 2019, the NCBI will help run a bioinformatics hackathon in Santa Cruz, California, hosted by the University of California, Santa Cruz (UCSC). Potential topics include:
- Building large scale graphs from pangenomes using several assembly methods
- Simplification of mapping
- Resolving haplotypes
- Identification of population-specific structural variants
- Defining haplotype-specific expression, visualization, and coordination with the GRC
Continue reading “Pangenomics in the Cloud hackathon, March 25-27, 2019”
From March 11-13, 2019, the NCBI will help run a bioinformatics hackathon in the North Carolina Research Triangle hosted by the University of North Carolina, Chapel Hill (UNC).
Potential topics include:
- technical metadata homogenization
- a simple interface for using ontologies to make data searches more sensitive and specific
- automated data analysis and visualization
- novel isoform identification and comparison
We’re looking for people who have experience in working with subjects like these. If this describes you, please apply!
This event is for researchers, including students and postdocs, who use bioinformatics data or develop pipelines for large scale RNA-Seq analyses from high-throughput experiments. The event is open to anyone selected for the hackathon and willing to travel to UNC. Continue reading “Announcing the first ever RNA-Seq in the Cloud hackathon!”
From January 9th – 11th, the NCBI will help run a bioinformatics hackathon in Southern California hosted by the Computational Sciences Research Center at San Diego State University. We reached out to the global computational biology and virology community as part of this effort to make data more accessible.
The hackathon teams look forward to leveraging metagenomic datasets in the cloud to find data based on organismal content and update taxonomy – but most of all – hunt down new viruses!
Follow along with the event with NCBI tweets and see our work on GitHub.
We are pleased to announce the second installment of the SoCal Bioinformatics Hackathon. From January 9-11, 2019, the NCBI will help run a bioinformatics hackathon in Southern California hosted by the Computational Sciences Research Center at San Diego State University!
We’re specifically looking for folks who have experience in computational virus hunting or adjacent fields to identify known, taxonomically-definable and novel viruses from a few hundred thousand metagenomic datasets that we’ll put on cloud infrastructure. This event is for researchers, including students and postdocs, who are already engaged in the use of bioinformatics data or in the development of pipelines for virological analyses from high-throughput experiments. If this describes you, please apply! The event is open to anyone selected for the hackathon and willing to travel to SDSU (see below).
Continue reading “NCBI to assist in Virus Hunting Data Science Hackathon January 9-11, 2019”