You can now download PGAP from GitHub and run it on your machine, compute farm or the cloud, on any public or privately-owned genome. PGAP predicts genes on bacterial and archaeal genomes using the same inputs and applications used inside NCBI. This is a great opportunity for you to try it now and send us comments (please use GitHub issues).
This May, the NCBI will host a women’s collaborative biodata science hackathon on the NIH Campus in Bethesda, Maryland!
We are now collecting project proposals focusing on building tools and pipelines for advanced analysis of biomedical datasets including text, images, next generation sequencing data, proteomics, and metadata. Proposals for tutorial pipelines and educational tools for advanced analysis are also welcome. Submit your project proposal by March 4, 2019.
We are pleased to announce the first ever pangenomics, graphs and haplotypes hackathon.
- Building large scale graphs from pangenomes using several assembly methods
- Simplification of mapping
- Resolving haplotypes
- Identification of population-specific structural variants
- Defining haplotype-specific expression, visualization, and coordination with the GRC
As the American Society of Human Genetics (ASHG) conference is around the corner, the NCBI staff begin to prep for their presentations in San Diego. Here is some background for dbGaP’s poster about their process to improve data storage and accessibility.
Visit Poster 1435T “Storage and use of dbGaP data in the cloud” Thursday, October 18 from 2 PM to 3PM. (Exhibit Hall, Ground Floor)
We recently updated the BLAST AMI on Amazon Web Services (AWS). The AMI is preconfigured with BLAST+ 2.7.1 and supports a subset of the NCBI BLAST URL API. The latest version also addresses long download times and preservation of BLAST databases and results between reboots.